PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00026782001
Common NameGSBRNA2T00026782001, LOC106401455
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 436aa    MW: 46314.6 Da    PI: 9.8345
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00026782001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-056284123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  GSBRNA2T00026782001 62 FVCEICNKGFQRDQNLQLHRRGH 84
                         89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.69E-76184No hitNo description
Gene3DG3DSA:3.30.160.601.4E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.7E-56284IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496284IPR007087Zinc finger, C2H2
SMARTSM003550.0176284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355250103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.7E-4126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.69E-7133158No hitNo description
SMARTSM00355180138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MPVDLDNSST VSGEASVSST GNQQNPLPKS AAKKKRNLPG MPDPDSEVIA LSPKTLLATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQKSSQEVKK KVYVCPETSC VHHDPSRALG  120
DLTGIKKHFC RKHGEKKWKC DKCSKRYAVV SDWKAHSKIC GTKEYKCDCG TLFSRRDSFM  180
THRAFCDALA GESVRNHTHS KKQSPEILTR KKPVPDPKPS LAAPVETQPA ITIKRPESPK  240
TPREILQEAQ EPTGLNGVFF ESSSTSPSIY ASSCSQSLFA PSSSIEPISL GLSTSHGPSF  300
LCSTRFPAQP AMSATALLQK AAQMGAASSG GSLLRGLGIV SSTSPSMDSI VPNGLALGLP  360
CGGESSSGLK ELMMGNSSVF GPKQTTLDFL GLGRAVGNGG GPGSTLNGPR GGSIDALATF  420
GSGEFSGNDI GRRTS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00403DAPTransfer from AT3G50700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00026782001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532100.0AK353210.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-D18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697426.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ60.0IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A078GDB00.0A0A078GDB0_BRANA; BnaC05g34640D protein
STRINGBra036098.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.10.0indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]